for over a century. today we're investing in innovations that will define our future. every day, we're working to help set opportunity in motion. from financing a solar project for the milpitas school district to funding the institute at golden gate. because when you're giving, lending, and investing in more communities across the country, more opportunities happen. >> the night before he died, he had said to me, "we're due, and we're due for something big."

>> narrator: his name was john o'neill, and long before the world knew about osama bin laden, fbi agent o'neill was obsessed with him. >> he was among the first people to see the bin laden threat. >> narrator: he warned of al qaeda. >> he said that "we're at war with these people." >> narrator: he warned of the threat to the united states. >> "and we better not take them for granted because they are here to hurt us." >> narrator: but people at fbi headquarters thought john o'neill was too much of a maverick, and they stopped listening to him. >> you could be flagged as a problem, and your career could pretty much be over. >> narrator: o'neill left the fbi and took a new job as head of security at the world trade center. >> of all the places to go to work, and of all the ways that you could lose your life... >> narrator: tonight, frontline investigates the internal power struggle at the heart of the fbi's failure on september 11.

>> frontline is made possible by contributions to your pbs station from viewers like you. thank you. and by the corporation for public broadcasting. major funding is provided by the john d. and catherine t. macarthur foundation. committed to building a more just, verdant, and peaceful world. and by reva and david logan. committed to investigative journalism as the guardian of the public interest. additional funding is provided by the park foundation. dedicated to heightening public awareness of critical issues. and by the frontline journalism fund, supporting investigative reporting and enterprise journalism.

>> narrator: there was, after the horror of september 11, the inevitable question: did anyone in the government know? the move from chicago to headquarters in washington was a big promotion for special agent john o'neill. he drove all night from chicago and went straight to the office on a sunday morning. ( elevator bell rings ) he'd just arrived when the white house called. ( dial tone ) ( telephone dialing ) ( telephone rings ) >> it was a sunday morning. >> fbi. >> but i was in my office and i was reading intelligence, and i saw a report that indicated that the man who had plotted the

world trade center bombing in '93, the ringleader, ramzi ahmed yousef, he was about to move within pakistan, and there was a small window, a closing window, to catch him. and so, thinking there might be somebody at the fbi on a sunday morning, i called. >> narrator: o'neill had made his reputation investigating white-collar crime, drug rings, and abortion clinic bombings. >> i said, "who's this?" and he responded, "well, who the hell are you? i'm john o'neill." and i explained to him, i'm from the white house, and i do terrorism, and i need some help. and i told him our story on the classified phone line, and he went into action. >> narrator: in 20 years, he'd chased a lot of bad guys, but nobody like ramzi yousef. >> yousef is one of the most

dangerous people on the planet, very smart. getting him and incapacitating him was a significant public safety issue, and john o'neill recognized that, was not about to take no for an answer anywhere before he was taken into custody. ( telephone dialing ) ( telephone rings ) >> white house. >> o'neill put together an arrest team that managed to catch ramzi ahmed yousef in pakistan just before he moved into afghanistan, which would've been beyond our reach. it was a pretty intense couple of days, but it worked. >> narrator: for the next six years, o'neill and his agents would follow the bloody and complex trail from ramzi yousef to osama bin laden. >> the picture was still fuzzy-- i mean, it was by no means sharp-- that there was an emerging global islamic fundamentalist terrorist network that was becoming more and more engaged in the objective of

attacking american targets. >> when yousef fled from the trade center bombing in 1993, among the places he went, really right before he was apprehended in pakistan, was to the philippines, where he was mixing the bombs to blow up, you know, 12 jumbo jets in a 48-hour period and was not far away from at least attempting to carry out that plot, which would have resulted in thousands of deaths in two days. >> narrator: from the beginning, o'neill obsessed about the details of the ramzi yousef case. he dug into that plan to blow up the planes, known as the bojinka plot. investigators had found a connection with the world trade center bombing that led to yousef's co-conspirator, ahmad ajaj, and a terrorist training manual with a title that would translate into "al qaeda," "the base." they uncovered a list of phone numbers called by yousef and

other world trade center conspirators from their safe houses. one of those numbers belonged to osama bin laden, identified by an early cia report as an "islamic extremist financier." >> i think if you ask most terrorism experts in the mid- 1990s, "well, what about this man bin laden?", most people in the mid-1990s would have said, "ah, yes, the financier. the terrorist financier." what o'neill said was, "no, this man is not a financier. the money is money for a purpose. it's... the purpose is building a worldwide terrorist network based out of afghanistan, the point of which is going after the united states and after governments friendly to the united states, particularly in the arab world." >> narrator: once convinced bin laden was a threat to america, o'neill began a campaign within the fbi to sound the alarm. >> the first time i ever heard the name osama bin laden was from john o'neill, and john

o'neill was very much aware of who he was, who his group was, al qaeda. >> narrator: over time, robert "bear" bryant would become second in command at the fbi. >> he was a person that i had immense personal regard for, and i... we could argue like a couple of thieves in the night. >> narrator: o'neill argued for a plan that would represent a seismic shift in the way the fbi had always operated. he would give authority to a new, more analytic agent who would have enhanced technology to fight the new terrorism. that directly threatened the dominance of the group who held sway over the culture, the criminal division. >> from his point of view, it was very clear what had to be done. you would basically have a whole branch of the fbi that would be... not be touched by the criminal side. >> narrator: the criminal side: the j. edgar hoover g-men who carried the guns and made cases and arrests. the man who would eventually

lead the criminal division, tom pickard, aggressively competed with o'neill for the attention of the director, louis freeh. as a former street agent himself, freeh identified with the criminal division, and tom pickard was a longtime friend. to reinvigorate the counterterrorism effort, o'neill would try to muscle his way through the bureaucracy that surrounded louis freeh. but in that struggle, o'neill's personal style got in the way. they said he was too intense, pushed too hard, had what they called "sharp elbows." >> we often talked and joked about the fact that we weren't really in the club and we really didn't care, and that was something that john and i had shared on occasion. and there is a difference between those people who spend time in an organization and are happy to make it to the top and have never rolled over a stone or created a problem or solved a problem, you know, just to

carefully run through and be there and be promoted. john was not like that. ( slow jazz music playing ) >> narrator: o'neill just didn't do anything the fbi way, where, at the end of a long shift, they went home to their families. >> he was the type of guy who put his arm around you and take you out to dinner and smoke cigars and drink whiskey with at the end of the day, and really... and talk about all the issues in great depth. and he... that's... he took his business beyond the work hours and well into the evenings, and he'd like to do that. >> narrator: and in the button- down fbi, o'neill was considered too flashy. >> it was the presentation. it was the-- as he would call it-- it was the package. they resented sort of the burberry suit and the white pocket square and the expensive tie and the bruno magli shoes. you know, this wasn't the bureau. >> i kind of thought he was kind of a dandy. you know, he was impeccably

dressed. like, his fingernails were polished and his hair swooped back. and a bunch of us kind of, you know, started to call him the prince of darkness. >> he worked both ends of the candle pretty hard. we had a morning briefing every morning at 7:30. sometimes he would come in late, and i'd tell him i wanted him there. i don't care if he came in his slippers and pajamas, be there. and he was. ( laughter ) >> narrator: o'neill's days were spent analyzing fragments of information. there was the story about two of ramzi yousef's bojinka co- conspirators, wali khan amin shah and abdul hakim murad. in 1995, murad told a story of middle eastern pilots training at us flight schools and of a proposal to dive-bomb a jetliner into a federal building. it was a tantalizing bit of information.

agents were dispatched but then withdrawn. the investigation languished. >> i had a fairly low opinion of our headquarters throughout my whole career. it seemed like, you know, the headquarters was a very negative place where they would find a million reasons why you couldn't do something as opposed to why you could do something. >> narrator: james kallstrom was the powerful boss of the fbi's new york office. watching from a distance, he saw o'neill's attitude and expertise make enemies among the group that surrounded louis freeh. >> yeah, i'm sure there was some jealousy in the bureaucracy. there always is. you can get by with some sharper elbows for a while, but you need to be right a lot. you know the old saying "when you run with the wolves, don't trip," you know? >> narrator: at headquarters a whispering campaign began about o'neill's personal life. there was one version: married his high school sweetheart and had a couple of kids. then there was the truth.

>> john had been separated from his family for some time, and i think john would have said to you his family suffered as a result of that, as a result of his devotion to his job. >> i think the fbi was his mistress. he loved it. he loved it more than he loved any woman in his life. he loved it. >> narrator: and he loved valerie james. >> very first time i saw john, i did something i had never done before and will never do again. i sent him a drink. he just had the most... he was standing at the bar, and he had the most compelling eyes i had ever seen. >> narrator: she had her own children, and after a while they started calling him dad. he hinted he might marry their mom. the trouble was, he hadn't told her he was already married. >> i didn't know for two or three years. and someone that john worked with in the fbi's wife told me,

and it was bad. i was shocked. you know, my family was shocked. i loved him. it had been two or three years by that point. what are you going to do, you know? >> narrator: there weren't exactly fbi regulations against o'neill's behavior, but there were unwritten rules of the road, and the whisperers said o'neill's lifestyle made him unfit for his sensitive job. but for every enemy o'neill made at headquarters, it seemed he'd made an ally elsewhere. one of them, in the midst of her own struggle with louis freeh and the headquarters bureaucracy, he kept secret. >> the attorney general had seen john at meetings, knew he was an expert from his position at the fbi, and she would frequently say, "well, what does john think?" there were times i was sitting in her office and she'd ask that, and i'd say i didn't know, and she said, "well, call him." and literally, i would be dialing john's cell phone from the attorney general of the

united states' office. and you know, he'd get on the phone, "hi, how are you?" and i said, "look, i'm in ms. reno's office." and so, if she wanted to know, she knew she had the ability to reach out to him. this made him, in fairness, a little bit uncomfortable. he knew that this would not have been looked upon kindly by other people in the bureau. >> narrator: around washington, o'neill's allies and drinking buddies began to warn him that he should take his al qaeda crusade to a field office; he should leave headquarters. >> you got to be careful whose toes you step on, particularly in washington, because there's some pretty big shoes. and he... he created some headaches for himself at headquarters because he did manage to step on some toes. >> narrator: there was an opening in the new york city division. the boss up there, jimmy

kallstrom, was also a tough guy, a thorn in washington's side. he grabbed o'neill-- saved him, really. at headquarters, they were happy to see him go. and on january 1, 1997, john o'neill moved to new york. ( miles davis' "blue in green" playing) it was a promotion: assistant special agent in charge of counterterrorism and national security. he'd be in charge of a team of about 350 agents. and best of all, it was in new york. >> new york was the flagship office of the fbi. it's where it happens, in new york. i mean, that's where you wanted to be if you were an fbi agent. so it's only natural that john o'neill, who's-- you know, his whole life was the fbi, from what i could see-- would want to be in new york.

>> narrator: in the new york office, they were still piecing together the evidence in the 1993 world trade center bombing. they'd also had new information that bin laden had been involved in the shooting down of two american black hawk helicopters in somalia. the confession of captured al qaeda member jamal ahmed al fadl told of osama bin laden's efforts to develop chemical weapons, buy weapons-grade uranium, and to spread the al qaeda network into europe. o'neill was becoming obsessed, haunted by the specter of bin laden. >> my dad had a lot of video of osama bin laden. whatever was out there was actually in his apartment. he studied him several times. watched the videos, i know, several times. >> he would watch videotapes. he would read whatever material he could get his hands on. we had a fax in the house. people would fax him information

all the time. john would sit in bed or sit on the couch or wherever and constantly underline everything. >> he was obsessed by him. i think there's no question about it. he always knew that there was so much more that he didn't know, and that's what spooked him. what spooked him and what really used to drive him crazy was what he didn't know and how much was out there that he didn't know. >> two bombs minutes apart exploded without warning friday outside the us embassies in nairobi, kenya, and dar es salaam, tanzania. >> we had turned on the tv watching cnn, and john o'neill put it together in relatively short order and was convinced in his own mind that al qaeda was behind that. >> that clearly was the event that changed bin laden's profile dramatically because it was such a major event. two embassies done simultaneously showed a great deal of sophistication in the

organization. so this was a... was a major event. >> narrator: but at headquarters, the brass were engaged in a procedural dispute. >> we're in the command center, and people are being pulled in. i'm over there. there's all sorts of senior bureau people there. everybody's coming together. and the reason that this becomes a significant question almost immediately is because the fbi's got to deploy people overseas-- they're going to deploy people initially to kenya and tanzania-- and who's going to be the on-scene commander? >> narrator: o'neill believed his experience and expertise made him the obvious choice to lead the investigation as the on-scene commander. ( elevator bell rings ) but down in the sioc, there were those who wanted to cut new york and o'neill out. ( telephone dialing ) ( telephone rings ) >> fbi. >> narrator: on the q.t.,

townsend called o'neill. >> and he was, to say angry, disappointed, hurt. there becomes this bureaucratic arm wrestle over who's going to be the office of origin. >> narrator: o'neill desperately needed the help of us attorney mary jo white. ( telephone rings ) >> us attorney's office. >> he and i were both very adamant that the new york field agents who were most knowledgeable about bin laden and the al qaeda organization get over to africa as quickly as possible as the investigation was unfolding, because those first few days are often the6 most critical to whether you capture somebody or not, or figure out who's involved. >> narrator: and as it happened, deputy director bear bryant was out of cell phone range, on vacation. so the head of the criminal division, one of those men in louis freeh's inner circle, tom pickard, was temporarily in charge. he decided the new york team

would not take the lead in the investigation-- washington would-- and john o'neill would not get command. >> this is the world series and he's gotten benched, and that's exactly how he feels about it. and he is very hurt, very upset about it, and... and bitter. >> narrator: o'neill hit the phones. he ended up venting to bear bryant. >> i said, "you're going to have a stroke." he was so intense. >> interviewer: this is the first guy you heard the word "al qaeda" and "bin laden" from. shouldn't he be there? >> well, he wasn't. >> interviewer: but that wasn't your decision. i got a feeling that wasn't your decision. >> well, he wasn't there. >> interviewer: it wasn't your decision, was it? >> he wasn't there.

>> narrator: stuck in new york, o'neill had to be content to learn as much as possible long distance. agents in east africa had found another training manual nearly identical to the one found in the world trade center bombing. one cooperating witness revealed that bin laden was planning to send operatives to the us for pilot training. a computer found in a raid showed hundreds of targets around the world already surveilled and approved. o'neill's agents identified a man named mohamed rashed daoud al-'owahali. he led them to a safe house in yemen that acted as a kind of terrorist telephone exchange, relaying messages to and from bin laden in afghanistan.l >> certainly after the embassy bombing in africa in '98, it was very obvious that what john was saying was right, that this was more than a nuisance, that this was a real threat.

but i don't think everyone came to the understanding that it was an existential threat. question was, "yeah, this... this group is more than a nuisance, but are they worth going to war with? after all, they've only attacked two embassies, and maybe that's a cost of doing business. this kind of thing happens. yes, we shoutqe and some energy trying to get béiority we have."swó+;umber >> narrator: at just this time in new york, a new crisis was emerging that would eventually get the entire bureau's attention. o'neill's international contacts were on full alert about the upcoming millennium celebrations, and o'neill was lobbying for a full-blown fbi response in the united states. >> the millennium, not only because of what that represented symbolically-- which, again, raises its danger value tremendously-- but also because of intelligence we were getting

in our... throughout our government had us all extremely concerned.ó5li >> narrator: from the new york sioc, o'neill and his team began to track a case that proved hisy theory that al qaeda had infiltrated the united states. an algerian national, ahmed ressam, had been arrested on tho border between canada and the state of washington. among his possessions, they found bomb-making material and maps. he had circled the los angeles airport on this one. >> we had always talked about the possibility that there were al qaeda cells in the united states. and we had looked for evidence, and we had encouraged fbi offices other than john o'neill's office in new york to start looking for evidence. >> narrator: the agents dug into the details of the plot. from a plan to blow up the los angeles airport, another trail led from boston to a planned

attack in jordan. there were other conspirators in seattle, brooklyn and manhattan, where o'neill was worried about the massive new year's eve celebration in times square. >> certain documents were found on ressam's possession, documents that indicated a new york connection; in fact, a pretty strong connection to new york. >> narrator: one of ressam's co- conspirators lived in new york. abdel meskini was supposed to deliver money and a cell phone to ressam. o'neill's agents arrested him. >> arrests were made that had they not been uncovered... the plot had not been uncovered and those arrests made, we could have had horrific tragedies around the millennium. >> we have two million people, two million people compressed in this small area here in midtown manhattan. no incidents and... >> narrator: o'neill was one of those two million people. if al qaeda struck here, this was where he wanted to be.

( crowd cheering ) >> five, four, three, two, one! ( loud cheering ) ( music playing ) >> and i remember talking to john shortly after midnight. there was a sense of accomplishment. we had just made the arrests in the... the ressam spin-off, and, you know, certainly we believed that we got everybody that we needed to find, but, you know, you're never really 100% sure of that. >> and so, i think a lot of the fbi leadership for the first time realized that o'neill was right, that there probably were al qaeda people in the united states. they realized that only after they looked at the results of the investigation of the millennium bombing plot. so, by february of 2000, i think senior people in the fbi were saying there probably is a

network here in the united states and we have to change the way the fbi goes about finding that network. >> narrator: if the bureau was finally going to reorganize itself to take on terror, o'neill wanted significant influence in that process. he needed a highly visible, powerful platform. as it happened, jimmy kallstrom's old job, head of the new york office, was open. o'neill pulled out all the stops and made a play for it, but there were some administrative problems on his record. he'd lost a bureau cell phone and a palm pilot. then there was the time his old buick broke down. val was with him. he figured he'd just pop into an fbi safe house to pick up a bureau car, he'd take her home, and that would be that. but headquarters called taking the car "unauthorized use of government property." >> i think what happens in the fbi, it's a very militaristic

society, and you have to... if you're being investigated by opr, office of professional responsibility, and there's a question, they don't want to promote somebody that's got a cloud over them, even a minor thing like a vehicle. >> narrator: bear bryant had retired. louis freeh promoted his longtime friend, tom pickard, to deputy director. it was not good news for agent o'neill. it was pickard who decided o'neill would not lead the investigation in east africa. and now, pickard and freeh decided john o'neill would not get the big job in new york. >> my daddy always said, "don't kill your mavericks; they might save your life someday. and they're the ones that will always have the great ideas, so try to take care of them." and john was a maverick, a brilliant maverick.

>> narrator: the buzz around the new york office was that the new boss, barry mawn, wasn't keen on keeping o'neill around. >> barry was a skeptic. he had heard sort of the headquarters' gossip about john o'neill's style. but it was funny; i can remember saying to john, "barry doesn't stand a chance. if you decide to win him over, you'll win him over. >> there was a knock on the door, and john was holding two beers. and he said, "well, i understand you're an irishman and you like to drink beer. these are for you." so i laughed. he wanted to stay in new york. he said, "i will be your most loyal supporter, and all i ask in return is that you be supportive of me in my efforts." and so, i said, "well, we got a deal, and we'll go forward." >> narrator: as the weeks wore on and just as that investigation about the car

incident seemed a thing of the past, o'neill attended a conference of other agents in florida. >> we were meeting in bal harbour, at the marriott. john came in. he is just... i don't remember seeing john as distraught as he was this night. "what has happened?" he told me he left his briefcase in this room of 150 fbi agents and got a phone call. couldn't hear on his cell phone, so he just walked outside to take his call. walked back in, his briefcase was gone. he was completely freaked. >> narrator: o'neill's bag contained classified documents. taking them out of his fbi office was against the rules. >> and he knew even if there had been nothing in it, his sense was, because the bureau had come down hard on him the time before for something stupid, that even if it was nothing more than he'd lost bureau equipment, he was

going to get... this was going to become a federal case; this was going to be a big deal in terms of the bureau, and it was going to be used to hurt him. >> narrator: hours later, the bag was retrieved. fingerprint analysis showed the documents hadn't been tampered with, but the damage was done. >> john always wanted to be thought of as being close to perfect. and for him to be criticized for something like the suitcase... the briefcase incident, whatever the truth value of that incident was, it hurt him a lot because he always wanted to be thought of as close to perfect-- perfectly dressed, perfectly briefed-- and didn't want anybody to think that he was in any way not the number one guy in terms of performance. >> narrator: at headquarters, they pounced. the fbi's office of professional

responsibility began a criminal investigation. o'neill was in real trouble. he hired a lawyer and hunkered down to save his job. >> he was consumed by this job, and the job turned on him. when he would make some foolish mistake, they came down awfully hard on him. given what his contribution was, given what he had scarified, he... there was a sense of entitlement, and it's a terrible sense of unfairness. his view was people above him felt threatened by him, by his expertise, and so didn't really want him around. >> narrator: as the criminal investigation against o'neill dragged on inside the fbi, o'neill had his agents paying attention to american embassies, especially in jordan and saudi arabia, and us military targets because an egyptian informant had told them an american warship would be hit by al qaeda. then, on october 12, 2000, al

qaeda struck. the guided missile destroyer uss "cole" was the target of a suicide mission. 17 sailors died. >> john came to me and said, "it's al qaeda," and... and i totally agreed with him. and he said, "you got to get to the director, and we got to get this so the new york office responds initially." >> narrator: it took hours for barry mawn to convince director freeh to let new york take the lead and to authorize o'neill as the on-scene commander. >> interviewer: washington headquarters of the fbi happy that o'neill was going? >> i... my recollection is that i got questioned on it. "is john the best guy to send?" and i had no hesitancy and said, "absolutely, he's the best guy to send."

>> interviewer: why would they have said that? >> well, again, i think it kind of goes back to a little bit of the history john had with some of the folks back there, that there was probably some questioning as, "well, do we want to send o'neill." and, "he does have sharp elbows." or, "his style may be..." they were concerned that he wasn't the best guy to go and that you needed someone more of a diplomat. my view, to a certain extent, is when you have a major incident like that, you really don't need a diplomat at that particular point in time. you need somebody that knows what to do and is going to do it and get it done. >> narrator: o'neill and the members of his rapid deployment team immediately headed for yemen. >> this was a case that he was really pushing hard on, that he understood that this wasn't just a venue where they set off a bomb, that they were connections between yemen and east africa,

and yemen and afghanistan, and yemen and europe, and that there were... this was very much of an important operational base for these guys. and that if he could illuminate that base, that he could begin to really put a dent in this network. >> narrator: but when he got to yemen, o'neill discovered how hard his task was going to be. >> they're in impossible conditions, the agents. i mean, they don't have anyplace to sleep. he's got agents sleeping on the floor. they're working ridiculous hours. it's... it's hot as all get-out, and they're in impossible... and it's in a hostile environment. >> we had to move in caravans from the hotel out to the "cole," or from the hotel to some of the sites where we believed the terrorists and their support network had been, and those were in caravans of ncis-fbi personnel, all armed,

surrounded by yemeni security force personnel. so these caravans would be eight, ten, 12 cars long. it... it was certainly announcing our presence any time we went somewhere. everybody in that... in that city knew who we were and where we were going, and it... it gave us an uneasy feeling. >> narrator: to protect the hundreds of investigators on the ground, o'neill and american military commanders wanted to show the yemenis a forceful presence-- guns ready, perimeters established. but much to o'neill's surprise, that approach quickly angered the american ambassador, barbara bodine, who felt his actions were harming us-yemeni government relations. >> you had an ambassador who wanted to be fully in control of everything that every american official did in the country and resented the fact that suddenly there were hundreds of fbi

personnel in the country and only a handful of state department personnel. she wanted good relations with yemen as the number one priority, john o'neill wanted to stop terrorism as the number one priority, and the two conflicted. >> this results in meetings between the attorney general and state, fbi, cia and justice. but ambassador pickering is at it-- he's the undersecretary-- and the attorney general. i mean, if things are getting raised to that kind of a level, this has become such a bone of contention between them. >> narrator: but on the ground in yemen, the law enforcement agents saw a very different john o'neill. >> i think he developed a... a real sense of closeness with the senior yemeni officials. they referred to him in arabic as "alach," which is "the brother," and oftentimes

referred to him as "the commander" or "your commander." they had a real sense of appreciation for his seniority in the us government and for what he represented. and i knew that they came to trust john. >> narrator: for six years, at the center of the fbi's counterterrorism effort, o'neill and his team had built the evidence on the mounting bin laden threat: failed plots to kill hundreds of americans in jordan; ressam's explosives headed to lax; an aborted al qaeda plot to blow up another american warship, the uss "the sullivans"; and now the "cole." the yemenis finally agreed to let the fbi join in the interrogation of one of their most prominent suspects: fahad al quso. o'neill and his agents believed al quso knew about bin laden's desire to videotape the destruction of the "cole," and possibly a whole lot more. o'neill worked his newly developed yemeni police

officials and old allies in the cia, but the weeks were taking their toll. o'neill needed a break. he'd get back to al quso after he returned from new york at the first of the year. >> i have to tell you, when john came home-- he got home, i think, it was two days before thanksgiving because he kept telling me he was going to try to be home for thanksgiving-- he... john had dropped 20-25 pounds. >> narrator: in new york, he plotted his return to yemen. he'd taken a yemeni police delegation on a tour of elaine's and other hotspots. he was working them, trying to get unfettered access to al quso and what he knew. but then he was told he wouldn't be allowed to return to yemen. ambassador bodine denied his visa. >> i mean, john was not rational on the topic of ambassador barbara bodine. i mean, "livid" would be putting it mildly.

i mean, one can't forget that... that john was... he was very american, but he was also very irish. >> interviewer: and that means? >> that means when he got hot, he got hot. and he was hot; there's no question about it. i think he felt that... that she was on the wrong side. >> narrator: ambassador bodine would not grant frontline's request for an interview. she was quoted in the "new yorker" magazine: "the idea that john or his people or the fbi were somehow barred from doing their job is insulting to the us government, which was working on al qaeda before john ever showed up. this is all my embassy did for ten months." for weeks, the ambassador had been making the case against o'neill, even lobbying louis freeh. finally, her accusations had

their intended effect. headquarters supported her decision not to let o'neill back into yemen. >> john was upset. she was badmouthing him. she had caused a stir at headquarters. i actually think john was more disappointed that our headquarters didn't back us as far as sending him back and... and taking a stronger stand with the state department. eventually, our headquarters said, "well, let's try and work around not having john go back." and so that's what i had to do. >> narrator: so, o'neill would not be in yemen. the investigation slowed to a crawl. >> i watched with dismay as the issue of the uss "cole" completely disappeared from the us scene completely, again, in a new administration. it was just not on their agenda.

clearly, it was not on the agenda of the congress, the media or anyone else. again, it went into oblivion. >> narrator: by spring, intelligence about al qaeda forces in yemen convinced o'neill they were about to target his agents. o'neill pleaded with barry mawn to pull them out, and mawn agreed. o'neill's investigation in yemen was effectively over. >> we don't know what would have happened if john could have done his job in yemen and had really had the full backup to go and to really push in yemen, and what kind of networks he could have exposed. but, you know, we do know that there were yemenis involved in the attacks of september 11. so, is it possible that if... if he had been able to really open up that network and really expose that network, that he could have in some way deterred the tragedy of september 11? i don't think we know. but it... it's sad because we

won't know the answer to that, but i think there is at least a fighting... he would have had a fighting chance if he'd been able to do his job. >> narrator: by early summer of 2001, other intelligence services were putting the bush white house on full alert. every single indication was that al qaeda was planning a major attack on the united states. >> in june of 2001, the intelligence community issued a warning that a major al qaeda terrorist attack would take place in the next many weeks. and so, in my office in the white house complex, the cia sat, briefed the domestic us federal law enforcement agencies-- immigration, federal

aviation, coast guard, customs, and the fbi was there as well agreeing with cia-- told them that we were entering a period where there was a very high probability of a major terrorist attack. >> narrator: in new york, o'neill was also convinced al qaeda had picked a target, but he was by now more marginalized than ever at the fbi. and so, in july of 2001, when that memo from the phoenix office pleading for investigations of flight schools made its way to headquarters, it was not passed on to o'neill or mawn in new york; nor was the struggle that august of the minnesota office to investigate the alleged 20th hijacker, zacarias moussaoui. the leaders of the most sophisticated office in the fbi, the office that under o'neill had been dealing with these matters for six years, apparently were out of the loop.

>> john had heard the alarm bells, too, yet he felt that he was frozen out, that he was not in a capacity to really do anything about it anymore because of his relationship with the.. with the fbi. so, it was a source of... of real anguish for him. >> narrator: 13 months after that briefcase incident, with the investigation still open, a well-placed leak to a newspaper made sure his government career was over. >> the "new york times" is now starting to ask questions about that incident, both at the headquarters level and at the new york field office. in spite of sort of jimmy kallstrom and others trying to persuade the "new york times" that somebody had an agenda here, this was... this was really sort of ill motivated, it was clear that they were going to run with it. >> and that was the final nail in john o'neill's coffin that they were going to use to... to

have him retire. >> interviewer: did he know who did it? >> he suspected. >> interviewer: did he confront them? >> yes. >> interviewer: and what happened? >> it was completely denied. the... the person that he felt did it said, "absolutely not, wouldn't want to hurt you in any way, shape or form." >> interviewer: it's been reported that was tom pickard. >> that's who john felt it was, tom pickard. and john really never knew. he was out to get john for a long time, and john never really knew why. >> narrator: at the time, tom pickard was interim director of the fbi. now retired, pickard would not agree to an interview, but, in a letter to frontline, he wrote:

"i did not leak it and there are no facts that even remotely suggest that i did." earlier, in "esquire" magazine, pickard was further quoted on the matter. "the briefcase was a big deal. it was not so much that he lost it; he shouldn't have had those materials with him in the first place. losing the briefcase just added to it. let's just say it was not john o'neill's finest hour." at the end of august 2001, agent o'neill ended his 25-year career with the fbi. he was 49 years old. o'neill needed to make some money. just being john o'neill had gotten very expensive. jimmy kallstrom and others made some calls. there was one job in particular he was really interested in. it paid $350,000 a year, but it also had a special kind of significance for o'neill. it was chief of security at those buildings ramzi yousef had

tried to destroy, the world trade center. >> and i joked with him. i said, "well, that will be an easy job. they're not going to bomb that place again." and he said... he says, "well, actually..." he immediately came back, and he said, "now, actually, they've always wanted to finish that job. i think they're going to try again." and of course, that's something i'll just never forget. >> narrator: on the night of september 10, john o'neill did what he loved doing, and he did it from his favorite table at elaine's. >> it was classic john. i... to this day, i can remember john sitting in a chair looking up at me with that... that classic john o'neill smile, saying, "doesn't get better than this." >> narrator: the talk, of course, turned to bin laden.

>> he had said to me, "we're due, and we're due for something big." that was just... he'd said that some things have happened in afghanistan, "i don't like, you know, the way things are lining up in afghanistan." and he said, "i just... i sense a shift, and i think things are going to happen." and i said, "when?" he said, "i don't know, but soon." and that was just his sense of things. we left about 2:30. john gave me a big bear hug and said, "i'll see you tomorrow." and john went home, and that was the last i saw of him. >> it appears that the... there is more and more fire and smoke enveloping the very top of the

building. >> oh, my god. >> that looks like a second plane has just hit... >> i saw the second plane, and of course by then there's no doubt what the issue is. and i call again and i don't get through, and i leave a message. i knew he should have been there by then. and frankly, i'm just concerned, as a friend, that... that he's okay. >> we got on the phone, and he says, "hey, babe, it's me." i said, "are you okay?" he says, "yeah, i'm fine." he said, "val, it's horrible; there's body parts everywhere." we said a few other things to one another, and he said, "okay, i'll call you in a little bit." i said, "okay." >> he said, "look, i'm on my way out now. have you talked to your mother today?" and i said, "no." he said to me, "well, give her a call. she's worried about you." and i said, "okay." >> he paged me to let me know he was okay, and that was the last contact i had.

>> i was running down the street. right after i got around st. vincent's hospital, on the "y," i started to run a little bit, and i saw the south tower collapse. >> i knew immediately john was dead. i don't know why i knew; i just knew. and i just said... i slumped down into a chair, and i said, "oh, my god, john's dead." and everybody said, "don't say that, don't say that, don't talk like that." but... about 2:00 in the afternoon, i said to my assistant... we were just sitting there waiting for him to call, everyone went back to my office, and he never called.

>> narrator: in the aftermath, what john o'neill had come so tantalizingly close to discovering became clear. some of it came from yemen, from that suspect al quso. he told about a secret meeting in malaysia attended by two "cole" bombing conspirators, nawaf al-hazmi and khalid al-mihdar. they had been coming in and out of the us on legal visas. they'd trained in american flight schools. they, too, had died on september 11, piloting flight 77 as it crashed into the pentagon. among the 2,977 people murdered

on september 11, in the debris of a fallen stairwell under what was once the south tower of the world trade center, they found john o'neill's body. >> next time on frontline... >> after 9/11, the gloves come off. >> secret government agencies... >> 70,000 locations, 1,300 government entities. >> ...black site prisons... >> a worldwide system run by the cia. >> ...covert wars. >> obama changed virtually nothing. >> the ball kept rolling, in secret. >> frontline and pulitzer prize- winner dana priest go inside "top secret america" >> explore more about john o'neill and the fbi at our web site, including a rare video

interview with o'neill. a look at how the 9/11 commission examined issues that were raised by john o'neill. study a chart of how al qaeda came into focus for o'neill and us intelligence in the '90s. and watch the longer, 90-minute version of this program online. follow frontline on facebook and twitter, or join the discussion at pbs.org. >> frontline is made possible by contributions to your pbs station from viewers like you. thank you. and by the corporation for public broadcasting. major funding is provided by the john d. and catherine t. macarthur foundation. committed to building a more just, verdant, and peaceful world. and by reva and david logan. committed to investigative journalism as the guardian of the public interest.

additional funding is provided by the park foundation. dedicated to heightening public awareness of critical issues. and by the frontline journalism fund, supporting investigative reporting and enterprise journalism. captioned by media access group at wgbh access.wgbh.org for more on this and other frontline programs, visit our web site at pbs.org. frontline's "the man who knew" is available on dvd. to order, visit shoppbs.org or call 1-800-play-pbs. frontline is also available for

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